Literature

Authors	Year	Title
J. M. Allen, Boyd, B. M., Nguyen, N. -phuong, Vachaspati, P., Warnow, T., Huang, D. I., Grady, P. G. S., Bell, K. C., Cronk, Q. C., Mugisha, L., Pittendrigh, B. R., Leonardi, M. Soledad, Reed, D. L., Johnson, K. P.	2017	Phylogenomics from Whole Genome Sequences Using aTRAM
J. M. Allen, Huang, D. I., Cronk, Q. C., Johnson, K. P.	2015	aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data
S. C. Barker, Whiting, M. F., Johnson, K. P., Murrell, A.	2003	Phylogeny of the lice (Insecta: Phthiraptera) inferred from small subunit rRNA
B. M. Boyd, Allen, J. M., Koga, R., Fukatsu, T., Sweet, A. D., Johnson, K. P., Reed, D. L.	2016	Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Sweet, A. D., Warnow, T., Shapiro, M. D., Villa, S. M., Bush, S. E., Clayton, D. H., Johnson, K. P.	2017	Phylogenomics using Target-restricted Assembly Resolves Intra-generic Relationships of Parasitic Lice (Phthiraptera: Columbicola)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Vachaspati, P., Quicksall, Z. S., Warnow, T., Mugisha, L., Johnson, K. P., Reed, D. L.	2017	Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice
C. Bueter, Weckstein, J. D., Johnson, K. P., Bates, J. M., Gordon, C. E.	2009	Comparative phylogenetic histories of two louse genera found on Catharus thrushes and other birds.
S. E. Bush, Villa, S. M., Altuna, J. C., Johnson, K. P., Shapiro, M. D., Clayton, D. H.	2019	Host defense triggers rapid adaptive radiation in experimentally evolving parasites
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.	2016	Unlocking the black box of feather louse diversity: A molecular phylogeny of the hyper-diverse genus Brueelia
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.	2015	Data supporting a molecular phylogeny of the hyper-diverse genus Brueelia
S. L. Cameron, Covacin, C., Johnson, K. P.	2006	Evolution of the mitochondrial genomes of lice
S. L. Cameron, Johnson, K. P., Whiting, M. F.	2007	The Mitochondrial Genome of the Screamer Louse Bothriometopus (Phthiraptera: Ischnocera): Effects of ExtensiveGene Rearrangements on the Evolution of the Genome
T. A. Catanach, Johnson K. P.	2015	Independent origins of the feather lice (Insecta: Degeeriella ) of raptors
T. A. Catanach, Johnson, K. P., Marks, B. D., Moyle, R. G., Valim, M. Paiva, Weckstein, J. D.	2019	Two lineages of kingfisher feather lice exhibit differing degrees of cospeciation with their hosts
T. A. Catanach, Valim, M. Paiva, Weckstein, J. D., Johnson, K. P.	2018	Cophylogenetic analysis of lice in the Colpocephalum complex (Phthiraptera: Amblycera)
D. H. Clayton, Bush, S. E., Goates, B. M., Johnson, K. P.	2003	Host defense reinforces host-parasite cospeciation
D. H. Clayton, Bush, S. E., Johnson, K. P.	2004	Ecology of Congruence: Past Meets Present
D. H. Clayton, Johnson K. P.	2003	Linking coevolutionary history to ecological process: Doves and lice
D. H. Clayton, Johnson K. P.	2001	Lice as probes
D. H. Clayton, Johnson K. P.	2001	What's bugging brood parasites?
D. H. Clayton, Price, R. D., Johnson, K. P.	2006	Two new species of Dennyus (Collodennyus) chewing lice (Phthiraptera: Amblycera: Menoponidae) from swiftlets (Apodiformes: Apodidae)
R. H. Cruickshank, Johnson, K. P., Smith, V. Stuart, Adams, R. J., Clayton, D. H., Page, R. D. M.	2001	Phylogenetic analysis of partial sequences of Elongation Factor 1alpha identifies major groups of lice (Insecta: Phthiraptera)
E. DiBlasi, Johnson, K. P., Stringham, S. A., Hansen, A. N., Beach, A. B., Clayton, D. H., Bush, S. E.	2018	Phoretic dispersal influences parasite population genetic structure
G. C. ESCALANTE, Sweet, A. D., MCCRACKEN, K. G., Gustafsson, D. R., Wilson, R. E., Johnson, K. P.	2016	Patterns of cryptic host specificity in duck lice based on molecular data
J. Hughes, Kennedy, M., Johnson, K. P., Palma, R. L., Page, R. D. M.	2007	Multiple cophylogenetic analyses reveal frequent cospeciation between Pelecaniform birds and Pectinopygus lice
K. P. Johnson	2006	The origin and diversification of lice (Phthiraptera)
K. P. Johnson, Adams, R. J., Clayton, D. H.	2002	The phylogeny of the louse genus Brueelia does not reflect host phylogeny
K. P. Johnson, Adams, R. J., Clayton, D. H.	2001	Molecular systematics of Goniodidae (Insecta : Phthiraptera)
K. P. Johnson, Adams, R. J., Page, R. D. M., Clayton, D. H.	2003	When do parasites fail to speciate in response to host speciation?
K. P. Johnson, Allen, J. M., Olds, B. P., Mugisha, L., Reed, D. L., Paige, K. N., Pittendrigh, B. R.	2014	Rates of genomic divergence in humans, chimpanzees and their lice
K. P. Johnson, Bush, S. E., Clayton, D. H.	2005	Correlated evolution of host and parasite body size: Tests of Harrison's Rule using birds and lice
K. P. Johnson, Clayton D. H.	2004	Untangling coevolutionary history
K. P. Johnson, Clayton D. H.	2000	Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes)
K. P. Johnson, Clayton D. H.	2000	A molecular phylogeny of the dove genus Zenaida: Mitochondrial and nuclear DNA sequences
K. P. Johnson, Clayton D. H.	1999	Swiftlets on islands: genetics and phylogeny of the Seychelles and Mascarene swiftlets
K. P. Johnson, Clayton, D. H., Dumbacher, J. P., Fleischer, R. C.	2010	The flight of the Passenger Pigeon: Phylogenetics and biogeographic history of an extinct species
K. P. Johnson, Cruickshank, R. H., Adams, R. J., Smith, V. Stuart, Page, R. D. M., Clayton, D. H.	2003	Dramatically elevated rate of mitochondrial substitution in lice (Insecta: Phthiraptera)
K. P. Johnson, Dietrich, C. H., Friedrich, F., Beutel, R. G., Wipfler, B., Peters, R. S., Allen, J. M., Petersen, M., Donath, A., Walden, K. K. O., Kozlov, A. M., Podsiadlowski, L., Mayer, C., Meusemann, K., Vasilikopoulos, A., Waterhouse, R. M., Cameron, S. L., Weirauch, C., Swanson, D. R., Percy, D. M., Hardy, N. B., Terry, I., Liu, S., Zhou, X., Misof, B., Robertson, H. M., Yoshizawa, K.	2018	Phylogenomics and the evolution of hemipteroid insects
K. P. Johnson, Drown, D. M., Clayton, D. H.	2001	A data based parsimony method of cophylogenetic analysis
K. P. Johnson, Kennedy, M., McCracken, K. G.	2006	Reinterpreting the origins of flamingo lice: cospeciation or host-switching?
K. P. Johnson	2003	Phylogenetics of Psocoptera and the origins of lice
K. P. Johnson, Malenke, J. R., Clayton, D. H.	2009	Competition promotes the evolution of host generalists in obligate parasites
K. P. Johnson, McKinney, F., Sorenson, M. D.	1999	Phylogenetic constraint on male parental care in the dabbling ducks
K. P. Johnson, Mockford E. L.	2003	Molecular systematics of Psocomorpha (Psocoptera)
K. P. Johnson, Moyle, R. G., Witt, C. C., Faucett, R. C., Weckstein, J. D.	2001	Phylogenetic relationships in the louse genus Penenirmus based on nuclear (EF-l alpha) and mitochondrial (COI) DNA sequences
K. P. Johnson, Nguyen, N. -phuong, Sweet, A. D., Boyd, B. M., Warnow, T., Allen, J. M.	2018	Simultaneous radiation of bird and mammal lice following the K-Pg boundary
K. P. Johnson, Price R. D.	2006	Five new species of Myrsidea Waterston (Phthiraptera: Menoponidae) from bristlebills and greenbuls (Passeriformes: Pycnonotidae) in Ghana
K. P. Johnson, Reed, D. L., Parker, S. L. Hammond, Kim, D., Clayton, D. H.	2007	Phylogenetic analysis of nuclear and mitochondrial genes supports species groups for Columbicola (Insecta: Phthiraptera)
K. P. Johnson, Shreve, S. M., Smith, V. Stuart	2012	Repeated adaptive divergence of microhabitat specialization in avian feather lice
K. P. Johnson, Sorenson M. D.	1999	Phylogeny and biogeography of dabbling ducks (genus: Anas): a comparison of molecular and morphological evidence