Literature

Authorssort descendingYearTitle
J. M. Allen, Boyd, B. M., Nguyen, N. -phuong, Vachaspati, P., Warnow, T., Huang, D. I., Grady, P. G. S., Bell, K. C., Cronk, Q. C., Mugisha, L., Pittendrigh, B. R., Leonardi, M. Soledad, Reed, D. L., Johnson, K. P.2017Phylogenomics from Whole Genome Sequences Using aTRAM
J. M. Allen, Huang, D. I., Cronk, Q. C., Johnson, K. P.2015aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data
S. C. Barker, Whiting, M. F., Johnson, K. P., Murrell, A.2003Phylogeny of the lice (Insecta: Phthiraptera) inferred from small subunit rRNA
B. M. Boyd, Allen, J. M., Koga, R., Fukatsu, T., Sweet, A. D., Johnson, K. P., Reed, D. L.2016Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Sweet, A. D., Warnow, T., Shapiro, M. D., Villa, S. M., Bush, S. E., Clayton, D. H., Johnson, K. P.2017Phylogenomics using Target-restricted Assembly Resolves Intra-generic Relationships of Parasitic Lice (Phthiraptera: Columbicola)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Vachaspati, P., Quicksall, Z. S., Warnow, T., Mugisha, L., Johnson, K. P., Reed, D. L.2017Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice
C. Bueter, Weckstein, J. D., Johnson, K. P., Bates, J. M., Gordon, C. E.2009Comparative phylogenetic histories of two louse genera found on Catharus thrushes and other birds.
S. E. Bush, Villa, S. M., Altuna, J. C., Johnson, K. P., Shapiro, M. D., Clayton, D. H.2019Host defense triggers rapid adaptive radiation in experimentally evolving parasites
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.2016Unlocking the black box of feather louse diversity: A molecular phylogeny of the hyper-diverse genus Brueelia
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.2015Data supporting a molecular phylogeny of the hyper-diverse genus Brueelia
S. L. Cameron, Covacin, C., Johnson, K. P.2006Evolution of the mitochondrial genomes of lice
S. L. Cameron, Johnson, K. P., Whiting, M. F.2007The Mitochondrial Genome of the Screamer Louse Bothriometopus (Phthiraptera: Ischnocera): Effects of ExtensiveGene Rearrangements on the Evolution of the Genome
T. A. Catanach, Johnson K. P.2015Independent origins of the feather lice (Insecta: Degeeriella ) of raptors
T. A. Catanach, Johnson, K. P., Marks, B. D., Moyle, R. G., Valim, M. Paiva, Weckstein, J. D.2019Two lineages of kingfisher feather lice exhibit differing degrees of cospeciation with their hosts
T. A. Catanach, Valim, M. Paiva, Weckstein, J. D., Johnson, K. P.2018Cophylogenetic analysis of lice in the Colpocephalum complex (Phthiraptera: Amblycera)
D. H. Clayton, Bush, S. E., Goates, B. M., Johnson, K. P.2003Host defense reinforces host-parasite cospeciation
D. H. Clayton, Bush, S. E., Johnson, K. P.2004Ecology of Congruence: Past Meets Present
D. H. Clayton, Johnson K. P.2003Linking coevolutionary history to ecological process: Doves and lice
D. H. Clayton, Johnson K. P.2001Lice as probes
D. H. Clayton, Johnson K. P.2001What's bugging brood parasites?
D. H. Clayton, Price, R. D., Johnson, K. P.2006Two new species of Dennyus (Collodennyus) chewing lice (Phthiraptera: Amblycera: Menoponidae) from swiftlets (Apodiformes: Apodidae)
R. H. Cruickshank, Johnson, K. P., Smith, V. Stuart, Adams, R. J., Clayton, D. H., Page, R. D. M.2001Phylogenetic analysis of partial sequences of Elongation Factor 1alpha identifies major groups of lice (Insecta: Phthiraptera)
E. DiBlasi, Johnson, K. P., Stringham, S. A., Hansen, A. N., Beach, A. B., Clayton, D. H., Bush, S. E.2018Phoretic dispersal influences parasite population genetic structure
G. C. ESCALANTE, Sweet, A. D., MCCRACKEN, K. G., Gustafsson, D. R., Wilson, R. E., Johnson, K. P.2016Patterns of cryptic host specificity in duck lice based on molecular data
J. Hughes, Kennedy, M., Johnson, K. P., Palma, R. L., Page, R. D. M.2007Multiple cophylogenetic analyses reveal frequent cospeciation between Pelecaniform birds and Pectinopygus lice
K. P. Johnson2006The origin and diversification of lice (Phthiraptera)
K. P. Johnson, Adams, R. J., Clayton, D. H.2002The phylogeny of the louse genus Brueelia does not reflect host phylogeny
K. P. Johnson, Adams, R. J., Clayton, D. H.2001Molecular systematics of Goniodidae (Insecta : Phthiraptera)
K. P. Johnson, Adams, R. J., Page, R. D. M., Clayton, D. H.2003When do parasites fail to speciate in response to host speciation?
K. P. Johnson, Allen, J. M., Olds, B. P., Mugisha, L., Reed, D. L., Paige, K. N., Pittendrigh, B. R.2014Rates of genomic divergence in humans, chimpanzees and their lice
K. P. Johnson, Bush, S. E., Clayton, D. H.2005Correlated evolution of host and parasite body size: Tests of Harrison's Rule using birds and lice
K. P. Johnson, Clayton D. H.2004Untangling coevolutionary history
K. P. Johnson, Clayton D. H.2000Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes)
K. P. Johnson, Clayton D. H.2000A molecular phylogeny of the dove genus Zenaida: Mitochondrial and nuclear DNA sequences
K. P. Johnson, Clayton D. H.1999Swiftlets on islands: genetics and phylogeny of the Seychelles and Mascarene swiftlets
K. P. Johnson, Cruickshank, R. H., Adams, R. J., Smith, V. Stuart, Page, R. D. M., Clayton, D. H.2003Dramatically elevated rate of mitochondrial substitution in lice (Insecta: Phthiraptera)
K. P. Johnson, Dietrich, C. H., Friedrich, F., Beutel, R. G., Wipfler, B., Peters, R. S., Allen, J. M., Petersen, M., Donath, A., Walden, K. K. O., Kozlov, A. M., Podsiadlowski, L., Mayer, C., Meusemann, K., Vasilikopoulos, A., Waterhouse, R. M., Cameron, S. L., Weirauch, C., Swanson, D. R., Percy, D. M., Hardy, N. B., Terry, I., Liu, S., Zhou, X., Misof, B., Robertson, H. M., Yoshizawa, K.2018Phylogenomics and the evolution of hemipteroid insects
K. P. Johnson, Drown, D. M., Clayton, D. H.2001A data based parsimony method of cophylogenetic analysis
K. P. Johnson, Kennedy, M., McCracken, K. G.2006Reinterpreting the origins of flamingo lice: cospeciation or host-switching?
K. P. Johnson2003Phylogenetics of Psocoptera and the origins of lice
K. P. Johnson, Malenke, J. R., Clayton, D. H.2009Competition promotes the evolution of host generalists in obligate parasites
K. P. Johnson, McKinney, F., Sorenson, M. D.1999Phylogenetic constraint on male parental care in the dabbling ducks
K. P. Johnson, Mockford E. L.2003Molecular systematics of Psocomorpha (Psocoptera)
K. P. Johnson, Moyle, R. G., Witt, C. C., Faucett, R. C., Weckstein, J. D.2001Phylogenetic relationships in the louse genus Penenirmus based on nuclear (EF-l alpha) and mitochondrial (COI) DNA sequences
K. P. Johnson, Nguyen, N. -phuong, Sweet, A. D., Boyd, B. M., Warnow, T., Allen, J. M.2018Simultaneous radiation of bird and mammal lice following the K-Pg boundary
K. P. Johnson, Price R. D.2006Five new species of Myrsidea Waterston (Phthiraptera: Menoponidae) from bristlebills and greenbuls (Passeriformes: Pycnonotidae) in Ghana
K. P. Johnson, Reed, D. L., Parker, S. L. Hammond, Kim, D., Clayton, D. H.2007Phylogenetic analysis of nuclear and mitochondrial genes supports species groups for Columbicola (Insecta: Phthiraptera)
K. P. Johnson, Shreve, S. M., Smith, V. Stuart2012Repeated adaptive divergence of microhabitat specialization in avian feather lice
K. P. Johnson, Sorenson M. D.1999Phylogeny and biogeography of dabbling ducks (genus: Anas): a comparison of molecular and morphological evidence
K. P. Johnson, Weckstein, J. D., Bush, S. E., Clayton, D. H.2011The evolution of host specificity in dove body lice

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Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith